Install AsaruSim
This pipeline is powered by Nextflow workflow manager. All dependencies are automatically managed by Nextflow through a preconfigured Docker container, ensuring a seamless and reproducible installation process.
AsaruSim Github repository.
Requirements
Nextflow
- A workflow engine for complex data pipelines.Docker
orSingularity
- Containers for packaging necessary software, ensuring reproducibility.
Install nextflow
Ensure you have the following installed on your system:
Java 8 or later
: Nextflow requires Java. Install it from Oracle or use a package manager like apt, brew, or yum depending on your OS.
curl -s https://get.nextflow.io | bash
chmod +x nextflow
sudo mv nextflow /usr/local/bin/
Nextflow is now installed and ready to use on your system. For further details on using Nextflow, refer to the official documentation.
Install docker
Run AsaruSim
- 1 - Clone the github repository
git clone https://github.com/GenomiqueENS/AsaruSim.git
cd AsaruSim
- 2 - Run using nextflow
nextflow run main.nf --help