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Install AsaruSim

This pipeline is powered by Nextflow workflow manager. All dependencies are automatically managed by Nextflow through a preconfigured Docker container, ensuring a seamless and reproducible installation process.

AsaruSim Github repository.

Requirements

  • Nextflow - A workflow engine for complex data pipelines.
  • Docker or Singularity - Containers for packaging necessary software, ensuring reproducibility.

Install nextflow

Ensure you have the following installed on your system:

Java 8 or later: Nextflow requires Java. Install it from Oracle or use a package manager like apt, brew, or yum depending on your OS.

curl -s https://get.nextflow.io | bash
chmod +x nextflow
sudo mv nextflow /usr/local/bin/

Nextflow is now installed and ready to use on your system. For further details on using Nextflow, refer to the official documentation.

Install docker

Install Docker.

Run AsaruSim

  • 1 - Clone the github repository
git clone https://github.com/GenomiqueENS/AsaruSim.git

cd AsaruSim
  • 2 - Run using nextflow
nextflow run main.nf --help